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whole-transcriptome microarray data decipher  (Veracyte Inc)

 
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    Veracyte Inc whole-transcriptome microarray data decipher
    Whole Transcriptome Microarray Data Decipher, supplied by Veracyte Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+transcriptome+microarray/whole+transcriptome+decipher+assay/10__1172_slash_jci165718-366-6-7
    Average 90 stars, based on 1 article reviews
    whole-transcriptome microarray data decipher - by Bioz Stars, 2026-10
    90/100 stars

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    Microarray:

    Article Title: Transcriptomic Features of Cribriform and Intraductal Carcinoma of the Prostate.
    Article Snippet: .. For a genomic analysis, normalized whole transcriptome microarray expression data for CaP patients were obtained from Decipher (Veracyte, Inc, San Diego, California USA). .. A gene set enrichment analysis (GSEA) was performed with the Broad Institute package for the functional annotation of differentially expressed genes and pathways between patients who were CF–/IDC– compared with CF+/IDC+ patients utilizing the Hallmark gene set collection from the Molecular Signature Database (MsigDB) [17,18].

    Expressing:

    Article Title: Transcriptomic Features of Cribriform and Intraductal Carcinoma of the Prostate.
    Article Snippet: .. For a genomic analysis, normalized whole transcriptome microarray expression data for CaP patients were obtained from Decipher (Veracyte, Inc, San Diego, California USA). .. A gene set enrichment analysis (GSEA) was performed with the Broad Institute package for the functional annotation of differentially expressed genes and pathways between patients who were CF–/IDC– compared with CF+/IDC+ patients utilizing the Hallmark gene set collection from the Molecular Signature Database (MsigDB) [17,18].



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    Establishment of mouse RILF model and analysis of transcriptome microarray data analysis. (A) HE and masson staining of lung tissue collected at 20 weeks after IR (control, 17 Gy). Lungs treated to 17 Gy dose irradiation develop foci of fibrosis. Collagen: blue; cytoplasm/epithelia: pink. Scale bar = 20 μm. (B) The PCA plot of the distribution status of the two groups (C) Volcano plots displaying significantly differentially expressed genes. |log2FC| ≥ 0.5 and P < 0.05. (D) Heatmap displaying the expressions of the DEGs. Blue corresponds to lower gene expression and red to higher gene expression. (E) Bar plot of enriched KEGG pathways/GO terms showing DEGs.

    Journal: Dose-Response

    Article Title: Ferroptosis-Associated Extracellular Matrix Remodeling in Radiation-Induced Lung Fibrosis Progression

    doi: 10.1177/15593258241289829

    Figure Lengend Snippet: Establishment of mouse RILF model and analysis of transcriptome microarray data analysis. (A) HE and masson staining of lung tissue collected at 20 weeks after IR (control, 17 Gy). Lungs treated to 17 Gy dose irradiation develop foci of fibrosis. Collagen: blue; cytoplasm/epithelia: pink. Scale bar = 20 μm. (B) The PCA plot of the distribution status of the two groups (C) Volcano plots displaying significantly differentially expressed genes. |log2FC| ≥ 0.5 and P < 0.05. (D) Heatmap displaying the expressions of the DEGs. Blue corresponds to lower gene expression and red to higher gene expression. (E) Bar plot of enriched KEGG pathways/GO terms showing DEGs.

    Article Snippet: Gene expression was detected using a transcriptome microarray (Mouse Sentrix-6 V2 Whole Genome Bead Chip, BD-201-0202; Illumina, Inc., San Diego, CA, USA).

    Techniques: Microarray, Staining, Control, Irradiation, Gene Expression